Tax Refunds Lost to Timing Rules: Lesson, File Early, Pay Late – Houston Tax Attorneys


You should always pay your taxes on time, right? After all, early payment avoids tax penalties and interest, and shows good faith compliance with tax obligations.

This is not always the best approach. Why? Taxpayers who pay early or even on time may be precluded from getting money back from the IRS if they overpaid their tax liability. In some cases, taxpayers who delay making payments to the IRS may have more refund rights than those who pay on time.

This issue typically arises in two scenarios where taxpayers make advance payments to the IRS. First, when taxpayers make payments but fail to file timely returns. Second, when taxpayers make payments and the IRS conducts an audit or makes an adjustment that results in a statutory notice of deficiency. In both cases, the taxpayer may later discover they not only don’t owe additional tax—they actually overpaid and are due a refund. This problem lies with payments made before either the late-filed tax return or the IRS’s notice of deficiency–which taxpayers may not be able to get back from the IRS. The recent Applegarth v. Commissioner, T.C. Memo. 2024-107, provides an opportunity to consider these timing issues.

Note: there are other rules that come into play for refunds in collection due process hearings, which are similar but different than when you have an IRS adjustment or notice of deficiency as we are addressing in this article.

Facts & Procedural History

The taxpayer in this case made estimated tax payments to the IRS for 2014 and 2015. The payments were all made on or before the extended due dates for the tax returns for 2014 and 2015.

The taxpayer then filed his 2014 return in June 2019 and never filed his 2015 return.

In November 2019, the IRS issued notices of deficiency to the taxpayer for both years. The taxpayer filed a petition with the U.S. Tax Court to challenge the IRS’s determinations.

The taxpayer provided an amended return to the IRS attorney during the tax litigation. The parties ultimately agreed that there were significant overpayments–$78,472 for 2014 and $9,603 for 2015. So not only did the taxpayer not owe the amounts asserted by the IRS in its notice, the taxpayer was actually owed money back from the IRS.

The question before the court was whether the U.S. Tax Court could order refunds of the overpayments given the statutory time limitations.

The Refund Claim Framework

This is probably not a surprise, but there are a number of deadlines set out in the tax code. For this case, there are two key provisions to consider, i.e., Section 6511(b)(2) and 6512(b)(3).

Section 6511(b)(2) establishes the “lookback” periods for refund claims. For taxpayers who file a tax return, they can recover payments made within three years plus any extension period before the refund claim. For taxpayers who don’t file a return, they can only recover payments made within two years of their refund claim.

Section 6512(b)(3) applies specifically to cases brought in the U.S. Tax Court. It limits the Tax Court’s ability to order refunds to: (1) payments made after the IRS issues its notice of deficiency, (2) payments that would be refundable if a refund claim had been filed on the notice date, or (3) payments covered by an actual refund claim filed before the notice date.

This creates a connection between the notice date and refund rights. Taken together, these code sections limit refund rights based on when payments were made relative to when refund claims are filed or deemed filed. This is why a taxpayer who files a petition with the U.S. Tax Court in response to a notice of deficiency has to focus on the date of the IRS’s notice of deficiency. The code treats this date as a hypothetical refund claim date and only allows recovery of payments made within specific “lookback” periods measured from this date. For taxpayers who haven’t filed returns, this lookback period is generally just two years before the date of the IRS notice. That is the issue in the Applegarth case.

In Applegarth, the taxpayer’s payments were all made more than two years before the November 2019 notice of deficiency. Because he hadn’t filed returns within the proper timeframe, the two-year lookback period applied. As a result, the U.S. Tax Court could not order refunds of the overpayments, even though everyone agreed that the taxpayer was otherwise entitled to the refunds.

Understanding the Lookback Periods

IIt is helpful to consider an example here. Imagine a taxpayer who paid $10,000 in taxes on April 15, 2020, but later discovers they only owed $5,000. Their ability to get back the $5,000 overpayment depends on when they take action.

If they file a tax return (which serves as a refund claim), they can recover payments made within 3 years plus any extension period before filing the refund claim. So if they file the tax return on April 15, 2023, they can get back the April 2020 payment. The 3-year lookback period protects their refund rights.

The situation is quite different if they never file a return and the IRS sends a notice of deficiency. In this case, they can only recover payments made within 2 years before the notice date. So if the IRS sends a notice on April 15, 2023, they can only get back payments made after April 15, 2021. Their April 2020 payment falls outside this 2-year window and is lost.

This is why the Applegarth case turned out the way it did. Since the taxpayer hadn’t filed returns within the proper timeframe, he was stuck with the shorter 2-year lookback period. His payments were made too early to fall within this window.

Planning Around the Timing Rules

These refund rules create some counterintuitive results. A taxpayer who files their return late but within three years of payment has more refund rights than a taxpayer who doesn’t file at all and waits for an IRS notice. And a taxpayer who pays at the last minute (but within two years of an IRS notice) may have more refund rights than one who paid years earlier.

This doesn’t mean taxpayers should delay payments to the IRS. Late payment penalties and interest usually outweigh any theoretical benefit from preserving refund rights. However, it does mean that taxpayers who have made payments should prioritize filing their returns, even if late. A late-filed return is far better than no return when it comes to preserving refund rights.

Given these concepts, there are a few issues that you may be thinking about. One is situations in which a taxpayer is required to file a return with an estimate, and has to true up the return later? There are situations like this built into our tax laws. We covered that topic here as to fixing estimates.

The other question is whether the taxpayer can argue that they did file a timely tax return, even though they technically did not. If the taxpayer has no other arguments, one argument might be that they did file a tax return as a refund claim, it was just an informal refund claim. There is some chance that something the taxpayer provided to the IRS could count as a refund claim–even if it was just a letter or other correspondence the taxpayer sent to the IRS.

Takeaway

The lesson from this case isn’t that taxpayers should delay paying their taxes. Rather, it highlights the critical importance of filing tax returns, even if they’re late. While timely tax payments are important, they must be paired with a filed return to preserve refund rights. Taxpayers who have made significant payments should file returns or protective claims if they discover potential overpayments. Otherwise, as Applegarth shows, the taxpayers could permanently lose their right to substantial refunds due to timing rules alone.

Watch Our Free On-Demand Webinar

In 40 minutes, we’ll teach you how to survive an IRS audit.

We’ll explain how the IRS conducts audits and how to manage and close the audit.  



Source link

Leave a Reply

Subscribe to Our Newsletter

Get our latest articles delivered straight to your inbox. No spam, we promise.

Recent Reviews


Our federal tax system depends on voluntary compliance by a large segment of taxpayers. Encouraging compliance, while deterring and punishing non-compliance, remains the IRS’s greatest challenge.

To meet this challenge, Congress has armed the IRS with a myriad of civil and criminal tax penalties. These penalties are designed to address different types of non-compliance, from simple mistakes to intentional fraud.

One might expect that these penalties would increase in severity as tax positions become more egregious–that a merely negligent position would face lesser penalties than an outright frivolous one. However, the recent case of Swanson v. Commissioner, T.C. Memo. 2024-105, shows how this may not always be the case. The case raises a counterintuitive question: could a taxpayer be better off by taking a completely frivolous position rather than one that is arguably valid but ultimately incorrect?

Facts & Procedural History

The taxpayer in this case was a high school teacher. He was paid $79,186 in 2018. On his 2018 income tax return, he claimed that his wages were not taxable income. He argued that they represented “capital” rather than wages and that capital is not subject to income tax. He included a Form 4852 (substitute W-2) reporting zero wages and stating that his job was his “source of capital.” As noted below, the courts have rejected these types of tax protester arguments.

The IRS audited the tax return and, not surprisingly, proposed an accuracy-related penalty under Section 6662(a). The tax adjustment and penalty ended up in the U.S. Tax Court. During the litigation, the IRS attorney filed a motion to ask the tax court to sanction the taxpayer by imposing a frivolous position penalty under Section 6673. The court opinion addresses whether the taxpayer was liable for Section 6662 or 6673 penalties.

About Accuracy-Related Penalties

The penalty in Section 6662 is the IRS’s go-to penalty when it comes to audit adjustments. It is rare to see a case when the IRS does not automatically propose this penalty.

The Section 6662 penalty is a 20% penalty on underpayments attributable to substantial understatements of tax or negligence. To understand this penalty, we have to consider both substantial understatements of tax and negligence, as either circumstance can trigger the penalty.

A. Substantial Understatement Penalty

The accuracy-related penalty can apply if there is a “substantial understatement.” For there to be an “understatement” the taxpayer has to file a tax return and the IRS has to audit the return or adjust the account to reflect a higher amount of tax.

The understatement is said to be “substantial” if the understatement exceeds the greater of 10% of the tax required to be shown on the return or $5,000. The amount is $10,000 for corporations.

There are nuances to these rules. For example, the understatement is reduced for any portion of the underpayment for which the taxpayer had “substantial authority.” Also, the understatement does not include amounts if the relevant facts were adequately disclosed on the return and there was a reasonable basis for the tax treatment. These rules recognize that some tax positions, while ultimately incorrect, are supported by enough authority that they should not trigger penalties.

In this case, the taxpayer’s wages of $79,186 would have generated a tax liability that likely exceeded the $5,000 threshold. However, the substantial understatement penalty did not apply because the tax court determined the return was invalid, as discussed below.

B. Negligence Penalty

Section 6662(c) and the regulations define “negligence” as any failure to make a reasonable attempt to comply with tax laws. The regulations provide examples of the types of conduct are negligent. An example is a taxpayer who fails to maintain proper books and records. The same goes for a taxpayer who cannot properly substantiate claimed tax deductions or tax credits.

The penalty is intended for taxpayers who claim tax positions that have little or no merit. This includes positions that would seem “too good to be true” to a reasonable and prudent person under the circumstances.

Courts have developed this standard further, holding that a taxpayer is negligent if they fail to exercise the level of care that a reasonable and ordinarily prudent person would exercise under similar circumstances. This standard recognizes that different taxpayers have different levels of sophistication and knowledge.

In this court case, the taxpayer’s position that wages were not taxable as income was so clearly contrary to established law that it went beyond mere negligence. Rather than making a reasonable attempt to comply with the tax laws (even if done negligently), he advanced an argument that had been repeatedly rejected by courts.

The tax court held that “because [the] petitioner failed to report both his wages and his rental income on the basis of frivolous legal positions, the Form 1040 is not an honest and reasonable attempt to satisfy the requirements of the tax law.”

This is based on the Supreme Court’s test in Beard v. Commissioner, which established that for a document to constitute a valid tax return, it must (1) contain sufficient data to calculate tax liability; (2) purport to be a return; (3) represent an honest and reasonable attempt to satisfy the requirements of the tax law; and (4) be executed by the taxpayer under penalties of perjury.

The taxpayer’s frivolous position that wages are not taxable income failed the third prong of this test–it was not an honest and reasonable attempt to comply with tax law. Because the document was not a valid return, it could not support the imposition of a Section 6662 penalty. As such, the court concluded that the taxpayer was not subject to the accuracy-related penalty.

The Frivolous Return & Position Penalties

Avoiding the accuracy-related penalty does not mean that the taxpayer is in the clear. A taxpayer advancing completely baseless arguments isn’t being careless–they are doing something qualitatively different that Congress addressed through Section 6702’s frivolous return penalty and Section 6673’s frivolous position penalty.

A. The Frivolous Return Penalty

Section 6702 allows the IRS to impose a $5,000 penalty for filing a frivolous tax return. Unlike the Section 6673 penalty described below, which requires tax court litigation, the IRS can assess this return penalty administratively.

The penalty applies to tax returns that reflect a position identified by the IRS as frivolous or which reflects a desire to delay or impede tax administration. It can even apply to a mentally incompetent person who might not otherwise be held legally liable for other penalties.

This penalty can apply even if the return is otherwise valid. For example, a return that correctly reports income but includes frivolous arguments in an attachment can trigger this penalty. The penalty can also apply to amended returns and requests for collection due process hearings that raise frivolous arguments. The IRS can assess multiple $5,000 penalties if the taxpayer files multiple frivolous returns or documents.

B. The Frivolous Position Penalty

Section 6673 allows the tax court to impose a penalty of up to $25,000 when a taxpayer maintains frivolous or groundless positions. Unlike the Section 6702 penalty, this penalty can only be imposed by the Tax Court, not by the IRS administratively. The purpose, as the court noted citing Takaba v. Commissioner, is “to compel taxpayers to think and to conform their conduct to settled principles before they file returns and litigate.”

The key distinction is that this penalty focuses on the taxpayer’s conduct during litigation, not just the filing of the return. The Tax Court can impose this penalty if it finds that:

  • The taxpayer instituted or maintained proceedings primarily for delay
  • The taxpayer’s position is frivolous or groundless
  • The taxpayer unreasonably failed to pursue available administrative remedies

The amount of the penalty – up to $25,000 – is discretionary and often reflects factors such as:

  • Whether the taxpayer has a history of raising frivolous arguments
  • Whether the taxpayer has been warned about frivolous positions
  • Whether the taxpayer has been previously sanctioned
  • The amount of court resources wasted

This penalty serves a different purpose than the Section 6702 penalty. While Section 6702 penalizes the act of filing a frivolous return, Section 6673 penalizes the persistence in advancing frivolous arguments after having the opportunity to abandon them. This is why the tax court often warns taxpayers during tax litigation that continuing to advance frivolous arguments could result in sanctions under Section 6673.

C. What Makes a Return “Frivolous?”

So what makes a position “frivolous?” The short version is that a frivolous position is one that has been repeatedly rejected by the courts or has no basis in law. The IRS maintains a list of these positions in Notice 2010-33. These positions are often advanced by tax protesters and include arguments such as:

  • Wages are not income because they are an equal exchange of labor for money
  • Only foreign-source income is taxable
  • The 16th Amendment was not properly ratified
  • Federal Reserve Notes are not legal tender
  • A taxpayer is not a “person” subject to tax
  • Filing a tax return is voluntary

Courts do not entertain these types of arguments because they have no basis in law and have been repeatedly rejected. When a taxpayer advances such arguments, they are not making a good faith attempt to comply with the tax laws. Rather, they are taking a position that is contrary to well-established law. This is different from a taxpayer who makes a mistake or takes an aggressive but colorable position on an unsettled area of tax law.

D. The IRS’s Frivolous Return Program

The IRS has a team that is tasked with identifying and processing frivolous tax returns. This is handled by the IRS service center when returns are filed.

When a return is identified as potentially frivolous, it is routed to the Frivolous Return Program in the Campus Operations unit. This specialized unit reviews the return to determine whether it contains positions identified as frivolous in Notice 2010-33 or otherwise reflects a desire to delay or impede tax administration. This allows the IRS to track patterns and identify emerging frivolous arguments.

Once a return is identified as frivolous, several things may happen:

  • The IRS may freeze any claimed refunds
  • The return may be adjusted to reflect the correct tax liability
  • The Section 6702 penalty may be assessed
  • The taxpayer may be referred for potential criminal investigation
  • The return preparer, if any, may be investigated for potential penalties

The IRS also maintains a database of taxpayers who have filed frivolous returns. This helps identify repeat offenders and can influence penalty determinations in future cases, as demonstrated by the court’s consideration of the taxpayer’s history in this case. These actions are all handled by the service center and generally not by the IRS auditor who is assigned to work the tax return if it is pulled for audit. This is a key aspect of how one might navigate these penalties.

Navigating the Various Penalties

In this case, the court imposed the maximum $25,000 penalty under Section 6673. The court noted that the taxpayer had a long history of taking frivolous positions regarding his tax liability and had been previously sanctioned by both the tax court and the Eleventh Circuit. Despite these prior sanctions and repeated warnings, the taxpayer continued to advance arguments that courts had uniformly rejected. The taxpayer’s persistence in the face of clear precedent and prior sanctions led the court to impose the maximum penalty.

However, the interplay of these penalty provisions creates an interesting strategic consideration. Consider a modified version of the facts: A taxpayer files a frivolous return asserting wages are not taxable income. The IRS examines the return and proposes only the accuracy-related penalty, not the Section 6702 frivolous return penalty. When the case reaches tax court, instead of persisting with the frivolous argument, the taxpayer argues only that the Section 6662 penalty cannot apply because the return was invalid under Beard. Following the reasoning in this case, the court would likely agree that no valid return was filed, meaning no accuracy-related penalty could apply.

By abandoning the frivolous position before litigation, the taxpayer could potentially avoid both the Section 6673 penalty (which requires maintaining the position in court) and the accuracy-related penalty (which requires a valid return). This seems to create a counterintuitive result where filing a frivolous return might lead to a better outcome than filing a merely negligent return.

This is not to say that taxpayers should plan on filing frivolous tax returns. The IRS has many other tools to combat frivolous positions, including the Section 6702 penalty, civil fraud penalties, and in egregious cases, criminal prosecution. As such, this article is focused on how one might proceed if they have already filed such a return and the IRS has audited the tax return or made adjustments to it.

Takeaway

This case shows the distinction between different penalties for false or incorrect tax returns. A taxpayer who makes an honest mistake due to the complexity of the tax law may face a 20% accuracy-related penalty. The same is true for a taxpayer who takes an aggressive but arguably supportable position that is ultimately rejected. However, paradoxically, a taxpayer who takes a completely frivolous position may escape the accuracy-related penalty altogether. Then they would just have to avoid the Section 6673 penalty by not maintaining their position during litigation.

Watch Our Free On-Demand Webinar

In 40 minutes, we’ll teach you how to survive an IRS audit.

We’ll explain how the IRS conducts audits and how to manage and close the audit.  



Source link